Having issues with homebrew/ujust commands

I’m having issues with ujust commands on a fresh install of bluefin. Possibly has something to do with secure boot recently being enabled (i have 2 hard drives with bluefin, same pc) so each was using secure boot. Anyways long story short, simple commands like ujust bluefin-cli aren’t properly working. It says it installs, but things like atuin don’t even work. Other issues in ujust choose on both hard drives. I went into my bios, disabled secure boot, but still having issues. My other hard drive won’t even rebase via ujust rebase-helper, it’s stuck on late December version. bluefin-nvidia-open:stable

Curious if anyone has advice?

Update with more details on the Atuin part (since ujust bluefin-cli runs but Atuin doesn’t integrate properly):

Atuin binary is there (v18.11.0), but no shell init in ~/.bashrc → Ctrl+R is plain bash, atuin search fails with $ATUIN_SESSION error.
atuin doctor shows preexec: null (bash-preexec detected but not active).
Full atuin doctor JSON:
{
“atuin”: {
“version”: “18.11.0”,
“commit”: “”,
“sync”: null,
“sqlite_version”: “3.46.0”
},
“shell”: {
“name”: “bash”,
“default”: “bash”,
“plugins”: [
“bash-preexec”
],
“preexec”: null
},
“system”: {
“os”: “Bluefin”,
“arch”: “x86_64”,
“version”: “43”,
“disks”: [
{ “name”: “composefs”, “filesystem”: “overlay” },
{ “name”: “/dev/nvme0n1p3”, “filesystem”: “btrfs” },
{ “name”: “/dev/nvme0n1p3”, “filesystem”: “btrfs” },
{ “name”: “/dev/nvme0n1p2”, “filesystem”: “ext4” },
{ “name”: “/dev/nvme0n1p3”, “filesystem”: “btrfs” },
{ “name”: “/dev/nvme0n1p1”, “filesystem”: “vfat” }
]
}
}

rpm-ostree status (booted deployment):
● ostree-image-signed:docker://ghcr.io/ublue-os/bluefin-nvidia-open:stable
Digest: sha256:3e46394c06c9e05e60b494c4e40dfd63bac284e74fa7f4092a4b2da860e139b0
Version: 43.20260113 (2026-01-13T01:41:15Z)
~/.bashrc has no Atuin lines (stock with bling.sh).
atuin status: Error: You are not logged in…
atuin search test: ERROR: Failed to find $ATUIN_SESSION…

This is on another fresh install.

Sorry if this is the wrong place to post. Everything else seems to work so far except atuin.

Follow-up on the older SSD (stuck on 43.20251230):

ujust update output ends with the same harmless hardlink error + EOL runtime warnings, then “Nothing to do”:

error: Checkout fedora-logos-42.0.1-2.fc43.noarch: Hardlinking fd/57c11f7dbc00b368b7e6af4e7d259436736fd7af9aa3fa08aae8e420f3b3a2.file to fedora-gdm-logo.png: File exists
… [EOL warnings for GNOME 47/45, freedesktop 23.08 etc.] …
Nothing to do.

rpm-ostree status (booted deployment):
● ostree-image-signed:docker://ghcr.io/ublue-os/bluefin-nvidia-open:stable
Digest: sha256:c2fd63edece715925e345e6bd640f43ea0503688c1dc40fc0bfbbc922eb80294
Version: 43.20251230 (2025-12-30T01:43:29Z)

Then ujust rebase-helper fails with:
error: Old and new refs are equal: ostree-image-signed:docker://ghcr.io/ublue-os/bluefin-nvidia-open:stable
error: Recipe rebase-helper failed with exit code 1

It thinks it’s already on the latest stable, but clearly isn’t (missing the Jan 13 2026 build).

Atuin is not enabled by default anymore. You can just copy the init lines for it to your own bashrc/zshrc if you want to use it.

Secure boot doesn’t affect any of the ujust commands.

Thanks a lot for the reply, I got everything figured out I think. :love_you_gesture: