Whenever I try to install a package through Flatpak, I get this error: opendir(refs/remotes): No such file or directory. This happens in the discovery store, through the flatpak cli. Running flatpak with sudo works fine. I have tried using flatpak repair -u, as well as removing ~/.local/share/flatpak. I only installed bazzite a few days ago and I was able to install packages with no issues for the first two days.
Not really sure why, but it’s working now after a reboot. Haven’t done anything besides what I mentioned in the first message, but I guess one of those plus a restart fixed it.