Failed to connect to dbus errors on 1st attempt to install an app

flatpak run org.standardnotes.standardnotes
[3:0407/114715.018162:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: No such file or directory
Error reading store file Error: ENOENT: no such file or directory, open ‘/var/home/neo/.var/app/org.standardnotes.standardnotes/config/Standard Notes/user-preferences.json’
at Object.openSync (node:fs:573:18)
at Object.func [as openSync] (node:electron/js2c/node_init:2:2559)
at Object.readFileSync (node:fs:452:35)
at t.readFileSync (node:electron/js2c/node_init:2:10245)
at T (/app/standardnotes/resources/app.asar/dist/index.js:2:142859)
at new C (/app/standardnotes/resources/app.asar/dist/index.js:2:144693)
at new mi (/app/standardnotes/resources/app.asar/dist/index.js:2:204517)
at /app/standardnotes/resources/app.asar/dist/index.js:2:286510
at 4053 (/app/standardnotes/resources/app.asar/dist/index.js:2:287612)
at n (/app/standardnotes/resources/app.asar/dist/index.js:2:833659) {
errno: -2,
code: ‘ENOENT’,
syscall: ‘open’,
path: ‘/var/home/neo/.var/app/org.standardnotes.standardnotes/config/Standard Notes/user-preferences.json’
}
LaunchProcess: failed to execvp:
xdg-settings
[3:0407/114716.762809:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: No such file or directory
[3:0407/114716.762845:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: No such file or directory
Checking for beta autoupdate feature for deb/rpm distributions
Found package-type: deb
11:47:16.849 › Checking for update
extServer: Server started at http://127.0.0.1:45xxx
11:47:16.867 › Generated new staging user ID: 18cf4be3-2f3d-5b4a-9d7d-bb0ed7ddcb37
[3:0407/114716.886000:ERROR:wayland_event_watcher.cc(43)] libwayland: [destroyed object]: error 7: failed to import supplied dmabufs: Could not bind the given EGLImage to a CoglTexture2D

/app/bin/start-standardnotes: line 8: 3 Trace/breakpoint trap (core dumped) zypak-wrapper /app/standardnotes/standard-notes $@

System Details Report


Report details

  • Date generated: 2025-04-07 12:03:39

Hardware Information:

  • Hardware Model: Lenovo IdeaCentre T540-15ICB G
  • Memory: 16.0 GiB
  • Processor: Intel® Core™ i7-9700 × 8
  • Graphics: NVIDIA GeForce GTX 1660 Ti
  • Graphics 1: Intel® UHD Graphics 630
  • Disk Capacity: 2.0 TB

Software Information:

  • Firmware Version: O3QKT34A
  • OS Name: Bluefin (Version: 41.20250406.1 / FROM Fedora Silverblue 41)
  • OS Build: b1d7262
  • OS Type: 64-bit
  • GNOME Version: 47
  • Windowing System: Wayland
  • Kernel Version: Linux 6.13.6-200.fc41.x86_64

bluefin-nvidia-open iso
installed, updated system, rebooted. Installed Standard notes from flatpak and instantly get an error. Tried notesnook and I also get errors. Tried changing Flatseal settings and nothing worked. Any help would be greatly appreciated.

I just installed and ran Standard Notes from the command line, and got a subset of the errors you got.

❯ flatpak run org.standardnotes.standardnotes 
[3:0407/162052.582163:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: No such file or directory
LaunchProcess: failed to execvp:
xdg-settings
[3:0407/162053.466884:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: No such file or directory
[3:0407/162053.466920:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: No such file or directory
Checking for beta autoupdate feature for deb/rpm distributions
Found package-type: deb
16:20:53.522 › Checking for update
extServer: Server started at http://127.0.0.1:45653
16:20:53.811 › Checking for update (already in progress)
16:20:54.542 › Update for version 3.195.25 is not available (latest version: 3.195.13, downgrade is disallowed).

But, it runs okay. I haven’t make any FlatSeal changes.

Have you verified that this file exists?
Error reading store file Error: ENOENT: no such file or directory, open ‘/var/home/neo/.var/app/org.standardnotes.standardnotes/config/Standard Notes/user-preferences.json’

It was created for me when I first ran SN.

I also noticed this:

11:47:16.867 › Generated new staging user ID: 18cf4be3-2f3d-5b4a-9d7d-bb0ed7ddcb37
[3:0407/114716.886000:ERROR:wayland_event_watcher.cc(43)] libwayland: [destroyed object]: error 7: failed to import supplied dmabufs: Could not bind the given EGLImage to a CoglTexture2D

For what it’s worth, I’m also using Wayland, same version of Bluefin, but I’m using bluefin-dx-nvidia. My Intel video card drives my displays, and my Nvidia GPU crunches data. Maybe the open driver is causing some of the problem(s)?

Thanks for the reply. Not sure what the issue is. I also tried installing Notesnook via flatpack and same thing happened. Neither of those apps would open at all for me though. I guess we’ll see how things go from here on out as I install more apps.